Albert Perlas; Kateri Bertran; Francesc Xavier Abad; Carles M. Borrego; Miquel Nofrarías; Rosa Valle; Lola Pailer García; Antonio Ramis; Martí Cortey; Vicenç Acuña; Natàlia Majó "Persistence of low pathogenic avian influenza virus in artificial streams mimicking natural conditions of waterfowl habitats in the Mediterranean climate." Science of the Total Environment 863 (2022): 160902-. Valentí Rull; Oriol Sacristán Soriano; Alexandre Sánchez Melsió; Carles Borrego; Teresa Vegas Vilarrúbia "Bacterial phylogenetic markers in lake sediments provide direct evidence for historical hemp retting." Quaternary Science Reviews 295 (2022): 107803-. Meritxell Gros; Josep Mas Pla; Alexandre Sánchez Melsió; Mira Célic; Marc Castaño; Sara Rodríguez Mozaz; Carles Borrego; José Luís Balcázar; Mira Petrovic "Antibiotics, antibiotic resistance and associated risk in natural springs from an agroecosystem environment." Science of the Total Environment 857 (2022): 159202-. Laura Guerrero Latorre; Neus Collado; Nerea Abasolo; Gabriel Anzaldi; Sílvia Bofill Mas; Albert Bosch; Lluís Bosch; Sílvia Busquets; Antoni Caimari; Núria Canela; Albert Carcereny; Carme Chacón; Pilar Ciruela; Irene Corbella; "The Catalan Surveillance Network of SARS-CoV-2 in Sewage: design, implementation, and performance." Scientific Reports 12 (2022): -. Giulia Gionchetta; Mireia Fillol; Noelia López; Elissavet Kassotaki; Alexandre Sánchez Melsió; Carmen Gutiérrez; Oriol Gutiérrez; José Luís Balcázar; Carles M. Borrego "Impact of nitrate addition on the resistome and mobilome from a full-scale sewer." Chemical Engineering Journal 439 (2022): -. Giannis-Florjan Norra; Luis Baptista-Pires; Elisabeth Cuervo Lumbaque; Carles M.Borrego; Jelena Radjenovic "Chlorine-free electrochemical disinfection using graphene sponge electrodes." Chemical Engineering Journal 430 (2022): 132772-. Joan Cáliz; Jéssica Subirats; Xavier Triadó-Margarit; Carles M. Borrego; Emilio O. Casamayor "Global dispersal and potential sources of antibiotic resistance genes in atmospheric remote depositions." Environment International 160 (2022): -. Albert Carcereny; David García Pedemonte; Adán Martínez Velázquez; Josep Quer; Damir García Cehic; Josep Gregori; Andrés Antón; Cristina Andrés; Tomás Pumarola; Carme Chacón Villanueva; Carles M. Borrego; Albert Bosch; Susana "Dynamics of SARS-CoV-2 Alpha (B.1.1.7) variant spread: The wastewater surveillance approach." Environmental Research 208 (2022): 112720-. Maganha de Almeida Kumlien, A.; C. Pérez-Vega; E. González-Villalobos; C.M. Borrego; J.L. Balcázar "Genome analysis of a new Escherichia phage vB_EcoM_C2-3 with lytic activity against multidrug-resistant Escherichia coli." Virus Research 307 (2022): 198623-. M. Rusiñol; I. Zammit; M. Itarte; E. Forés; S. Martínez-Puchol; R. Gironés; C.M. Borrego; Ll. Corominas; S. Bofill-Mas "Monitoring waves of the COVID-19 pandemic: Inferences from WWTPs of different sizes." Science of the Total Environment 787 (2021): 147463-. Dayana Jarma; Marta I. Sánchez; Andy J. Green; Juan Manuel Peralta-Sánchez; Francisco Hortas; Alexandre Sánchez-Melsió; Carles M. Borrego "Faecal microbiota and antibiotic resistance genes in migratory waterbirds with contrasting habitat use." Science of the Total Environment 783 (2021): -. Núria Catalán; Ada Pastor; Carles M. Borrego; Jeffrey A. Hawkes; Carmen Gutiérrez; Daniel von Schiller; Joan Pere Casas-Ruiz; Rafael Marcé "The relevance of environment vs. composition on dissolved organic matter degradation in freshwaters." Limnology and Oceanography 66 (2021): 306-320. Ana Carolina Maganha de Almeida Kumlien; Carles M. Borrego; J.L. Balcázar "Antimicrobial Resistance and Bacteriophages: An Overlooked Intersection in Water Disinfection." Trends in Microbiology (2021): -. Cristina Ávila; María J. García-Galán; Carles M. Borrego; Sara Rodríguez-Mozaz; Joan García; Damià Barceló "New insights on the combined removal of antibiotics and ARGs in urban wastewater through the use of two configurations of vertical subsurface flow constructed wetlands." Science of the Total Environment 755 (2021): 142554-. E. Forés; S. Bofill-Mas; M. Itarte; S. Martínez-Puchol; A. Hundesa; M. Calvo; C.M. Borrego; L. Corominas; R. Girones; M. Rusiñol "Evaluation of two rapid ultrafiltration-based methods for SARS-CoV-2 concentration from wastewater." Science of the Total Environment 768 (2021): 144786-. Fabrizio Pantanella; I. Lekunberri; A. Gagliardi; G. Venuto; A. Sànchez-Melsió; M. Fabiani; J.L. Balcázar; S. Schippa; M. De Giusti; C.M. Borrego; A. Solimini "Effect of Urban Wastewater Discharge on the Abundance of Antibiotic Resistance Genes and Antibiotic-Resistan Escherichia coli in Two Italian Rivers." International Journal of Environmental Research and Public Health 17 (2020): 6813-. Giulia Gionchetta; Mireia Fillol; Alexandre Sànchez-Melsió; Oriol Gutiérrez; José Luis Balcázar; Carles M. Borrego "Side effects of free nitrous acid on the sewer resistome and mobilome." Chemical Engineering Journal 455 (2020): 126657-. Borrego, Carles, Sabater, Sergi*, Proia, Lorenzo "Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir." Scientific Reports 10 (2020): -. Beatriz B. Oliveira; Bruno Veigas; Fábio Ferreira Carlos; Alexandre Sánchez-Melsió; José Luís Balcázar; Carles M. Borrego; Pedro Viana Baptista "Water safety screening via multiplex LAMP-Au-nanoprobe integrated approach." Science of the Total Environment 741 (2020): 1404-. Sergi Compte-Port; Mireia Fillol; Frederic Gich; Carles M. Borrego "Metabolic versatility of freshwater sedimentary archaea feeding on different organic carbon sources." PLoS One 15 (2020): e0231238-. Gros M.; Marti E.; Balcázar J.L.; Boy-Roura M.;Busquets A.; Colón J.; Sànchez-Melsió A.; Lekunberri I.; Borrego C.M.;Ponsá S.; Petrovic M. "Fate of pharmaceuticals and antibiotic resistance genes in a full-scale on-farm livestock waste treatment plant." Journal of Hazardous Materials (2019): 120716-. Subirats J.; Di Cesare A.; Varela della Giustina S.; Fiorentino A.; Ecker E.M.; Rodriguez-Mozaz S.; Borrego C.M.; Corno G. "High-quality treated wastewater causes remarkable changes in natural microbial communities and intI1 gene abundance." Water Research 167 (2019): -. Pastor A.; Catalán N.; Nagar N.; Light T.; Borrego C.M.; Marcé R. "A universal bacterial inoculum for dissolved organic carbon biodegradation experiments in freshwaters." Limnology and Oceanography: Methods 16 (2018): 421-433. Obrador B.; von Schiller D.; Marcé R.;, Gómez-Gener L.; Koschorreck M.; Borrego C.M.; Catalán N. "Dry habitats sustain high CO2 emissions from temporary ponds across seasons." Scientific Reports (2018): 3015-. Proia L.; Anzil A; Borrego C.M.; Farré M; Llorca M; Sanchís J.; Bogaerts P.; Balcázar J.L.; Servais P. "Occurrence and persistence of carbapenemases genes in hospital and wastewater treatment plants and propagation in the receiving river." Journal of Hazardous Materials (2018): 33-43. Proia L.; Anzil A; Subirats J; Borrego C.M.; Farré M; Llorca M; Balcázar J.L.; Servais P. "Antibiotic resistance in urban and hospital wastewaters and their impact on a receiving freshwater ecosystem." Chemosphere (2018): 70-82. Elissavet Kassotaki; Maite Pijuan; Adriano Joss; Carles M. Borrego; Ignasi Rodriguez-Roda; Gianluigi Buttiglieri "Unraveling the potential of a combined nitritation-anammox biomass towards the biodegradation of pharmaceutically active compounds." Science of the Total Environment 624 (2018): 722-731. E. O'Flaherty; C.M. Borrego; J.L. Balcázar; E. Cummins "Human exposure assessment to antibiotic-resistant Escherichia coli through drinking water." Science of the Total Environment 616-617 (2018): 1356-1364. Proia, A., Anzil, A., Subirats, J., Borrego, C.M., Farrè, M., Llorca, M., Balcázar, J.L., and Servais, P., "Antibiotic resistance along an urban river impacted by treated wastewaters." Science of the Total Environment 628-629 (2018): 453-466. I. Lekunberri; J.L. Balcázar; C.M. Borrego "Metagenomic exploration reveals a marked change in the river resistome and mobilome after treated wastewater discharges." Environmental Pollution 234 (2018): 538-542. Jessica Subirats, Xisca Timoner; Alexandre Sànchez-Melsió; José Luis Balcázar; Vicenç Acuña; Sergi Sabater; Carles Borrego "Emerging contaminants and nutrients synergistically affect the spread of class 1 integron-integrase (intI1) and sul1 genes within stable streambed bacterial communities." Water Research 138 (2018): 77-85. I. Lekunberri; J.L. Balcázar; C.M. Borrego "Detection and quantification of the plasmid-mediated mcr-1 gene conferring colistin resistance in wastewater.." International Journal of Antimicrobial Agents 50 (2017): 734-736. E. Nasri; J. Subirats; A. Sànchez-Melsió; H. Ben Mansour; C.M. Borrego; J.L. Balcázar "Abundance of carbapenemase genes (blaKPC, blaNDM and blaOXA-48) in wastewater effluents from Tunisian hospital." Environmental Pollution (2017): 371-374. O. Auguet; M. Pijuan; C.M. Borrego, S. Rodríguez-Mozaz; X. Triadó-Margarit; S. Varela Della Giustina; O. Gutiérrez "Sewers as potential reservoirs of antibiotic resistance." Science of the Total Environment (2017): 1047-1054. Jèssica Subirats; Xavier Triadó-Margarita; Ladislav Mandaric; Vicenç Acuña; José Luis Balcázar; Sergi Sabater; C.M. Borrego "Wastewater pollution differently affects the antibiotic resistance gene pool and biofilm communities across streambed compartments." Molecular Ecology 26 (2017): 5567-5581. Sergi Compte-Port; Jèssica Subirats; Mireia Fillol; Alexandre Sànchez-Melsió; Rafael Marcé; Pedro Rivas-Ruiz; Antoni Rosell-Melé; Carles M. Borrego "Abundance and co-distribution of widespread marine archaeal lineages in surface sediments of freshwater water bodies across the iberian peninsula." Microbial Ecology (2017): 1-12. Lekunberri, Itziar; Subirats, Jéssica; Borrego i Moré, Carles; Balcázar, José Luis "Exploring the contribution of bacteriophages to antibiotic resistance." Environmental Pollution 220 (2017): 981-984. Ikbel Denden Rafraf; Itziar Lekunberri; Alexandre Sànchez-Melsió; Mahjoub Aouni; Carles M. Borrego; José Luís Balcázar "Abundance of antibiotic resistance genes in five municipal wastewater treatment plants in the Monastir Governorate, Tunisia." Environmental Pollution 219 (2016): 353-358. Subirats, J.; Sànchez-Melsió, A.; Borrego, C.M.; Balcázar, J.L.; Simonet, P. "Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes." International Journal of Antimicrobial Agents 48 (2016): 163-167. Auguet O.; Pijuan M.; Borrego C.M.; Gutierrez O. "Control of sulfide and methane production in anaerobic sewer systems by means of Downstream Nitrite Dosage." Science of the Total Environment 550 (2016): 1116-1125. Fillol, M.; J.-C. Auguet; E. O. Casamayor; C. M. Borrego "Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage." ISME Journal 10 (2016): 665-677. Proia, L., von Schiller, D., Sànchez-Melsió, A., Sabater, S., Borrego, C.M., Rodríguez-Mozaz, S., Balcázar, J.L. "Occurrence and persistence of antibiotic resistance genes in river biofilms after wastewater inputs in small rivers." Environmental Pollution 210 (2015): 121-128. Llorens-Marès, T.; Triadó-Margarit, X.; Borrego, C.M.; Dupont, C.L.; Casamayor, E.O. "High bacterial diversity and phylogenetic novelty in dark euxinic freshwaters analyzed by 16S tag community profiling." Microbial Ecology 71 (2015): 566-574. Llirós, M.; García Armisen, T.; Darchambeau, F.; Morana, C.; Triadó Margarit, X.; Inceoğlu, O.; Borrego, C.M.; Bouillon, S.; Servais, P.; Borges, A.V.; Descy, J.-P.; CanfieldD.E.; Crowe, S.A. "Pelagic photoferrotrophy and iron cycling in a modern ferrugineous basin." Scientific Reports 5 (2015): -. Noguerola, I.; Picazo, A.; Llirós, M.; Camacho, A.; Borrego, C.M. "Diversity of freshwater Epsilonproteobacteria and dark inorganic carbon fixation in the sulphidic redoxcline of a meromictic karstic lake." FEMS Microbiology Ecology 91 (2015): 1-15. Fillol, Mireia; Sànchez Melsió, Alexandre; Gich Batlle, Frederic; Borrego i Moré, Carles "Diversity of Miscellaneous Crenarchaeotic Group archaea in freshwater karstic lakes and their segregation between planktonic and sediment habitats." FEMS Microbiology Ecology 91 (2015): fiv020-. Sara Rodríguez-Mozaz; Sara Chamorro; Elisabet Marti; Belinda Huerta; Meritxell Gros; Alexandre Sànchez-Melsió; Carles M. Borrego; Damià Barceló; José Luís Balcázar "Occurrence of antibiotics and antibiotic resistance genes in hospital and urban wastewaters and their impact on the receiving river." Water Research 69 (2015): 234-242. Tomàs Llorens-Mares; Shibu Yooseph; Johannes Goll; Jeff Hoffman; Maria Vila-Costa; Carles M. Borrego; Chris L. Dupont, Emili O. Casamayor; "Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics." ISME Journal 9 (2015): 1648-1661. Auguet, Olga; Pijuan, Maite; Guasch-Balcells, Helena;; Borrego, Carles; Gutiérrez, Oriol "Implications of downstream nitrate dosage in anaerobic sewers to control sulfide and methane emissions." Water Research 68 (2015): 522-532. Timoner, Xisca; Borrego, Carles M.; Acuña, Vicenç; Sabater, Sergi "The dynamics of biofilm bacterial communities is driven by flow wax and wane in temporary streams." Limnology and Oceanography 59 (2014): 2057-2067. Isabel Ferrera; Carles M. Borrego; Guillem Salazar; Josep Mª Gasol "Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene." Environmental Microbiology 16 (2014): 2953-2965. Romaní, A.M.; Borrego, C.; Díaz-Villanueva, V.; Freixa, A; Gich, F.; Ylla, I. "Shifts in microbial community structure and function in light and dark grown biofilms driven by warming." Environmental Microbiology 16 (2014): 2550-2567. Plasencia, Anna; Gich, Frederic; Fillol, Mireia; Borrego, Carles M. "Phylogenetic characterization and quantification of ammonia-oxidizing archaea and bacteria from Lake Kivu in a long-term microcosm incubation." International Microbiology 16 (2013): 177-189. Llirós, Marc; Trias, Rosalia; Borrego, Carles; Bañeras, Lluis "Specific Archaeal communities are selected on the root surfaces of Ruppia spp. and Phragmites australis." Wetlands 34 (2013): 403-411. Casamayor E.O.; Llirós M.; Picazo A.; Barberán A.; Borrego C.M.; Camacho A. "Contribution of deep dark fixation processes to overall CO2 incorporation and large vertical changes of microbial populations in stratified karstic lakes." Aquatic Sciences : Research Across Boundaries 74 (2012): 61-75. Llirós M.; Alonso-Sáez L.; Gich F.; Plasencia A.; Auguet O.; Casamayor E.O.; Borrego C.M. "Active bacteria and archaea cells fixing bicarbonate in the dark along the water column of a stratified eutrophic lagoon." FEMS Microbiology Ecology 77 (2011): 370-384. Plasencia A.; Bañeras L.; Llirós M.; Casamayor E.O.; Borrego C.M. "Maintenance of previously uncultured freshwater archaea from anoxic waters under laboratory conditions." Antonie van Leeuwenhoek 99 (2010): 402-408. Bañeras L.; Ros-Ponsatí M.; Cristina X.P.; García-Gil L.J.; Borrego C. "Phosphorus deficiency and kinetics of alkaline phosphatase in isolates and natural populations of phototrophic sulphur bacteria." FEMS Microbiology Ecology 73 (2010): 243-253. Llirós, M.; Gich, F.; Plasencia, A.; Auguet, J.C.; Darchambeau, F.; Casamayor, E.O.; Descy, J.P.; Borrego, C.M. "Vertical Distribution of Ammonia-Oxidizing Crenarchaeota and Methanogens in the Epipelagic Waters of Lake Kivu ." Applied and Environmental Microbiology 76 (2010): 6853-6863. Saccà A.; Borrego C.M.; Renda R.; Triadó X.; Bruni V.; Guglielmo L. "Predation impact of ciliated and flagellated protozoa during a summer bloom of brown sulfur bacteria in a meromictic coastal lake." FEMS Microbiology Ecology 70 (2009): 42-53. Ylla, I.; Borrego, C. M.; Romaní, A.M.; Sabater, S. "Availability of glucose and light modulates the structure and function of a microbial biofilm." FEMS Microbiology Ecology 69 (2009): 27-42. Serra T.; Borrego C.M.; Quintana X.D.; Calderer L.; López-Flores R.; Colomer J. "Quantification of the effect of nonphotochemical quenching on the determination of in vivo Chl a from phytoplankton along the water column of a freshwater reservoir." Photochemistry and Photobiology 85 (2009): 321-331. Auguet, J.C.; Borrego, C.M.; Bañeras, L.; Casamayor. E.O. "Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark." Environmental Microbiology 10 (2008): 2527-2536. Llirós, M.; Casamayor, E.O.; Borrego, C. M. "High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study." FEMS Microbiology Ecology 66 (2008): 331-342. Casamayor, E.O.; Ferrera, I.; Cristina, X.; Borrego, C.M.; Gasol, J.M. "Flow cytometric identification and enumeration of photosynthetic sulfur bacteria and potential for ecophysiological studies at the single cell level." Environmental Microbiology 9 (2007): 1969-1985. Pšenčík, J.; Arellano, J.B.; Ikonen, T.P.; Borrego, C.M.; Laurinmäki, P.A.; Butcher, S.A.; Serimaa, R.E.; Tuma, R. "Internal structure of chlorosomes from brown-colored Chlorobium species and the role of carotenoids in their assembly." Biophysical Journal 91 (2006): 1433-1440. Mallorquí, N.; Arellano, J.B.; Borrego, C.M.; Garcia-Gil, L.J. "Signature pigments of green sulfur bacteria in lower Pleistocene deposits from the Banyoles lacustrine area (Spain)." Journal of Paleolimnology 34 (2005): 271-280. Gich, F.; Lairs, R.; Danielsen, M.; Keely, B.J.; Abella, C.; Garcia-Gil, L.J.; Miller, M.; Borrego, C.M. "Characterization of the chlorosome antenna of the filamentous anoxygenic phototrophic bacterium Chloronema strain UdG9001." Archives of Microbiology 180 (2003): 417-426. Airs, R.L.; Borrego, C.M.; Garcia-Gil, L.J.; Keely, B.J. "Identification of the Bacteriochlorophyll homologs of Chlorobium phaeobacteroides strain UdG6053 grown at light limitation." Photosynthesis Research 70 (2002): 221-230. Martinez, A.; Arellano, J.B.; Borrego, C.M.; Lopez-Iglesias, C.; Gich, F.; García-Gil, L.J. "Topography and biometrics of chlorosomes by atomic force microscopy and freeze-drying for transmission electron microscopy." Photosynthesis Research 71 (2002): 83-90. Borrego, C.M.; Vila, X.P. "Bacterias fototróficas del azufre." Investigación y ciencia 315 (2002): 36-37. Camacho, A.; Vicente, E.;Garcia-Gil, L.J.; Miracle, M.R.; Sendra, M.D.; Vila, X.; Borrego, C.M. "Factors determining changes in the abundance and distribution of micro-, nano-, and picoplankton in Lake El Tobar (Central Spain)." Verhandlungen des Internationalen Verein Limnologie 28 (2002): 1-7. Arellano, J.B.; Melø, T.B.; Borrego, C.B.; Naqvi, K.R. "Bacteriochlorophyll e monomers, but not aggregates, sensitize singlet oxygen: implications for a self-photoprotection mechanism in chlorosomes." Photochemistry and Photobiology 76 (2002): 9-16. Guyoneaud, R.; Borrego, C. M.; Martinez-Planells, A.; Buitenhuis, E.T.; Garcia-Gil, L.J. "Light responses in the green sulfur bacterium Prosthecochloris aestuarii: changes in prosthecae length, ultrastructure, and antenna pigment composition." Archives of Microbiology 176 (2001): 278-284. Gich, F.; Borrego, C. M.; Martinez-Planells, A.; Steensgaard, D.B.; Holzwarth, A.R.; Garcia-Gil, L.J. "Variability of the photosynthetic antenna of a Pelodictyon clathratiforme population from a freshwater holomictic pond." FEMS Microbiology Ecology 37 (2001): 11-19. Arellano, J.B.; Borrego, C. M.; Martinez-Planells, A.; Garcia-Gil, L.J. "Effect of carotenoid deficiency on cells and chlorosomes of Chlorobium phaeobacteroides." Archives of Microbiology 175 (2001): 226-233. Arellano, J.; Melo, T.; Borrego, C.M.; Garcia-Gil, L.J.; Naqvi, K.R. "Nanosecond laser photolysis studies of chlorosomes and artificial aggregates containing bacteriochlorophyll e: evidence for the proximity of carotenoids and bacteriochlorophyhll a in chlorosomes from Chlorobium phaeobacteroides strain CL1401." Photochemistry and Photobiology 72 (2000): 669-675. Arellano, J.B.; Psencik, J.; Borrego, C.M.; Ma, Y.Z.; Guyoneaud, R.; Garcia-Gil, L.J.; Gillbro, T. "Effect of carotenoid biosynthesis inhibition on the chlorosome organization in Chlorobium phaeobacteroides strain CL1401." Photochemistry and Photobiology 71 (2000): 715-723. Garcia-Gil L.J.; Bañeras L.; Rodríguez-González J.; Borrego C.M. "Are phototrophic sulphur bacteria phosphate-limited?." Verhandlungen des Internationalen Verein Limnologie 27 (2000): 840-843. Steensgaard D.B.; van Walreee C.A.; Permentier H.; Bañeras L.; Borrego C.M.; Garcia-Gil L.J.; Amesz J.; Holzwarth A.R. "Fast energy transfer between BChl d and BChl c revealed in chlorosomes of the green sulfur bacterium Chlorobium limicola." Biochimica et Biophysica Acta 1457 (2000): 71-80. Bañeras L.; Borrego C.M; Garcia-Gil L.J. "Growth-rate dependent bacteriochlorophyll c/d rate in the antenna of Chlorobium limicola strain UdG6040." Archives of Microbiology 171 (1999): 350-354. Borrego C.M.; Arellano J.B.; Abella C.A.; Gillbro T.; Garcia-Gil L.J. "The molar extinction coefficient of bacteriochlorophyll e and the pigment stoichiometry in Chlorobium phaeobacteroides." Photosynthesis Research 60 (1999): 257-264. Borrego C.M.; Bañeras L.; Garcia-Gil L.J. "Temporal variability of Chlorobium phaeobacteroides antenna pigments in a meromictic karstic lake.." Aquatic Microbial Ecology 17 (1999): 121-129. Garcia-Gil L.J.; Vicente E.; Camacho A.; Borrego C.M.; Vila X.; Cristina X.P.; Rodriguez-Gonzalez J. "Vertical distribution of photosynthetic sulphur bacteria linked to saline gradients in Lake 'El Tobar' (Cuenca, Spain)." Aquatic Microbial Ecology 20 (1999): 299-303. Steensgaard D.B.; Van Walree C.A.; Bañeras L.; Borrego C.M.; Garcia-Gil L.J.; Holzwarth A. "Evidence for spatially separate bacteriochlorophyll c and bacteriochlorophyll d pools within the chlorosomal aggregate of Chlorobium limicola." Photosynthesis Research 59 (1999): 231-234. Borrego C.M.; Miller M.; Gerola P.D.; Cox R.P "Light intensity effects on pigment composition and organisation in the thermophilic green sulfur bacterium Chlorobium tepidum." Photosynthesis Research 59 (1999): 159-166. Borrego C.M.; Garcia-Gil L.J.; Cristina P.; Vila X.; Abella C.A. "Occurrence of new BChl d forms in natural populations of green photosynthetic sulfur bacteria." FEMS Microbiology Ecology 26 (1998): 257-267. Borrego C.M.; Garcia-Gil L.J.; Vila X.; Cristina X.P.; Figueras J.B.; Abella C.A. "Distribution of bacteriochlorophyll homologs in natural populations of brown-coloured photosynthetic sulfur bacteria." FEMS Microbiology Ecology 24 (1997): 301-309. Borrego C.M.; Garcia-Gil L.J. "Sorption of metals by Chlorobium spp." Microbiología : publicación de la Sociedad Española de Microbiología 13 (1997): 445-452. Vila X.; Dokulil M.; Garcia-Gil L.J.; Abella C.A.; Borrego C.M.; Bañeras L. "Composition and distribution of phototrophic bacterioplankton in the deep communities of several centereuropean lakes: the role of light quality." Archives of Hydrobiology 48 (1996): 183-196. Borrego C.M.; Garcia-Gil L.J. "Photosynthetic oxidation of MnS and FeS by Chlorobium spp.." Microbiología : publicación de la Sociedad Española de Microbiología 11 (1995): 351-358. Borrego C.M.; Garcia-Gil L.J. "Rearrangement of light harvesting bacteriochlorophyll homologs as a response of Green Photosynthetic Bacteria to low light intensities." Photosynthesis Research 45 (1995): 21-30. Verdú N.; Triola I.; Borrego C.M.; Garcia-Gil L.J. "Efecte d'una mescla estival episòdica en la dinàmica i estructura de la comunitat de microorganismes fotosintètics planctònics en l'estanyol del Sisó." Scientia gerundensis 21 (1995): 71-84. Borrego C.M.; Garcia-Gil L.J. "Separation of bacteriochlorophyll homologs by reversed-phase High Performance Liquid Chromatography." Photosynthesis Research 41 (1994): 157-163. Borrego C.M.; Garcia-Gil L.J. "Caracterización limnológica de la Coromina (Sant Miquel de Campmajor, Girona) una laguna hipereutrófica del sistema lacustre de Banyoles." Limnética 10 (1994): 43-51. Brunet R.; Bañeras L.; Borrego C.M. "Dilution as a restoration method in the eutrophic Lake Vilar (Banyoles, Spain)." Verhandlungen des Internationalen Verein Limnologie 25 (1993): 735-738. Borrego C.M.; Garcia-Gil L.J.; Bañeras L.J.; Brunet R.C. "Changes in the composition of sulfur bacterial communities in the three basins of Lake Banyoles (Spain)." Ver. Int. Verein. Limnol. 25 (1993): 720-725. Garcia-Gil L.J.; Borrego C.M.; Bañeras L.; Abella C.A. "Dynamics of phototrophic microbial populations in the chemocline of a meromictic basin of Lake Banyoles." Internationale Revue der Gesamten Hydrobiologie 78 (1993): 283-294. Borrego C.M.; Garcia-Gil L.J "Separation of chlorophyll a and bacteriochlorophyll c from mixed extracts by reversed-phase HPLC." Scientia gerundensis 19 (1993): 23-34. Garcia-Gil L. J.; Borrego C.M.; Hugas L.; Casamitjana X.; Abella C.A. "Horizontal distribution of a phototrophic bacterial population in an irregularly-shaped meromictic basin of Lake Banyoles (Banyoles, Spain)." Scientia gerundensis 14 (1988): 71-79.
Lluís Corominas; Carles Borrego; Mònica Escolà; Pablo Gago-Ferrero; Mira Petrovic; Sara Rodríguez-Mozaz; Nicole Schröter; Ivan Senta; Ian Zammit "Epidemiología y sociología basadas en el análisis de las aguas residuales." Tecnoaqua 42 (2020): 84-88.
Jéssica Subirats; Elena Royo; José Luís Balcázar; Carles M. Borrego "Real-time PCR assays for the detection and quantification of carbapenemase genes (blaKPC, blaNDM and blaOXA-48) in environmental samples." Environmental Science and Pollution Research (2017): 6710-6714.
Bañeras, L.; Gich, F.; Martinez-Medina, M.; Miller, M.; Abella, C.A.; Borrego, C. M. "New phylotypes of mesophilic filamentous anoxygenic phototrophic bacteria enriched from sulfide-containing environments." Environmental Microbiology Reports 1 (2009): 86-93.
Sergi Sabater; Xisca Timoner; Carles M. Borrego; Vicenç Acuña "Stream Biofilm Responses to Flow Intermittency: From Cells to Ecosystems." Frontiers in Microbiology 4 (2016): -. Balcázar, J.L.; Subirats, J.; Borrego, C.M. "The role of biofilms as environmental reservoirs of antibiotic resistance." Frontiers in Microbiology 6 (2015): -.