López Siles, M.; Khan, T.M.; Duncan, S.H.; Harmsen, H.J.M.; Garcia-Gil, L.J.; Flint, H.J. "Phylogenetic and phenotypic characterisation of Faecalibacterium prausnitzii isolates from the human large intestine." Journal of Crohn's and Colitis 5 (2011): S167-. López Siles, M.; Khan, T.M.; Duncan, S.H.; Busquets, D.; Harmsen, H.J.M.; Garcia-Gil, L.J.; Flint, H.J. "Faecalibacterium prausnitzii: a bacterium well adapted to life in the healthy gut environment.." Gut 60 (2011): A210-. López Siles, M.; Martínez-Medina, M.; Aldeguer, X.; Lopez-Oliu, C; Garcia-Gil, L.J. "Real-time PCR quantification of mucosa-associated Escherichia coli and Faecalibacterium prausnitzii to support Crohn's Disease diagnostics." Gut (2009): -. López Siles, M.; Martínez-Medina, M.; Aldeguer, X.; Garcia-Gil, L.J. "Mucosa-associated Escherichia coli and Faecalibacterium prausnitzii quantification by real-time PCR and its potential use as complementary diagnostic tool for inflammatory bowel diseases." Journal of Crohn's and Colitis 3 (2009): S135-S135. Mas-de-Xaxars, T.; López Siles, M.; Martínez-Medina, M.; Aldeguer, X.; Garcia-Gil, L.J. "A first experimental approach to the effect of Adalimumab treatment on the microbial composition of the intestinal mucosa in Crohn's disease patients." Journal of Crohn's and Colitis 3 (2009): S137-S137. Martínez-Medina, M.; López Siles, M.; Aldeguer, X.; Gonzalez-Huix, F.; López-Oliu, C.; Dahbi, G.; Blanco, J.E.; Blanco, J.; Darfeuille-Michaud, A.; Garcia-Gil, L.J. "P301 Molecular diversity of Escherichia Coli in human's gut: new evidences supporting the role of aiec in crohn's disease." Journal of Crohn's and Colitis 2 (2008): 93-93. Martinez-Medina, M.; Aldeguer, X.; Gonzalez-Huix, F.; Acero, D.; López Siles, M.; Garcia-Gil, L.J. "P197 Is Escherichia Coli more than a commensal bacterium in the intestinal mucosa of crohn's disease patients?." Journal of Crohn's and Colitis 1 (2007): 54-54.
López-Siles M, McConnell MJ, Martín-Galiano, AJ "Identification of Promoter Region Markers Associated With Altered Expression of Resistance-Nodulation-Division Antibiotic Efflux Pumps in Acinetobacter baumannii." Frontiers in Microbiology (2022): -. Tajuelo A, Carretero O, García-Ríos E, López-Siles M, Cano O, Vázquez M, Más V, Rodríguez-Goncer I, Lalueza A, López-Medrano F, Juan RS, Fernández-Ruiz M, Aguado JM, McConnell MJ, Pérez-Romero P. "Brief Research Report: Virus-Specific Humoral Immunity at Admission Predicts the Development of Respiratory Failure in Unvaccinated SARS-CoV-2 Patients." Frontiers In Immunology (2022): -. López-Siles M, Camprubí-Font C, Gómez Del Pulgar EM, Sabat Mir M, Busquets D, Sanz Y, Martinez-Medina M "Prevalence, Abundance, and Virulence of Adherent-Invasive Escherichia coli in Ulcerative Colitis, Colorectal Cancer, and Coeliac Disease." Frontiers In Immunology 10 (2022): 748839-. Tajuelo A , López-Siles M, Más V , Pérez-Romero P , Aguado JM , Briz V, McConnell MJ, Martín-Galiano AJ, López D "Cross-Recognition of SARS-CoV-2 B-Cell Epitopes with Other Betacoronavirus Nucleoproteins." International Journal of Molecular Sciences 23 (2022): 2977-. García-Ríos, E.; Gata-de-Benito, J., López-Siles, M.; McConnell, M.J.; Pérez-Romero, P "Optimization of a Lambda-RED Recombination Method for Rapid Gene Deletion in Human Cytomegalovirus." International Journal of Molecular Sciences 22 (2021): 10558-. Corral-Lugo, A; Lopez-Siles, M; Lopez, D; McConnell, M; Martin-Galiano, A.J.. "Identification and Analysis of Unstructured, Linear B-Cell Epitopes in SARS-CoV-2 Virion Proteins for Vaccine Development.." Vaccines 8 (2020): 397-. M. Lopez-Siles; X. Aldeguer; M. Sàbat Mir; M. Serra-Pagès; S. Duncan; J. Garcia Gil; M. Martínez Medina "Evaluation of bacterial biomarkers to aid in challenging inflammatory bowel diseases diagnostics and subtype classification." World Journal of Gastrointestinal Pathophysiology 11 (2020): 64-77. Díaz-Rizzolo DA; Kostov B; López-Siles M; Serra A; Colungo C; González-de-Paz L; Martinez-Medina M; Sisó-Almirall A; Gomis R. "Healthy dietary pattern and their corresponding gut microbiota profile are linked to a lower risk of type 2 diabetes, independent of the presence of obesity." Clinical Nutrition 39 (2020): 524-532. Fassatoui M; Lopez-Siles M; Díaz-Rizzolo DA; Jmel H; Naouali C; Abdessalem G; Chikhaoui A; Nadal B; Jamoussi H; Abid A; Gomis R; Abdelhak S; Martinez-Medina M; Kefi R. "Gut microbiota imbalances in Tunisian participants with type 1 and type 2 diabetes mellitus." Bioscience Reports 39 (2019): BSR20182348.-. Carla Camprubí-Font, Christa Ewers, Mireia Lopez-Siles and Margarita Martinez-Medina "Genetic and Phenotypic Features to Screen for Putative Adherent-Invasive Escherichia coli." Frontiers in Microbiology 10 (2019): 1-11. Lopez-Siles M; Enrich-Capó N; Aldeguer X; Sabat-Mir M; Duncan SH; Garcia-Gil LJ; Martinez-Medina M. "Alterations in the Abundance and Co-occurrence of Akkermansia muciniphila and Faecalibacterium prausnitzii in the Colonic Mucosa of Inflammatory Bowel Disease Subjects." Frontiers In Cellular And Infection Microbiology 8 (2018): 281-. Carla Camprubí-Font, Mireia Lopez-Siles, Meritxell Ferrer-Guixeras, Laura Niubó-Carulla, Carles Abellà-Ametller, Librado Jesús Garcia-Gil & Margarita Martinez-Medina "Comparative genomics reveals new single-nucleotide polymorphisms that can assist in identification of adherent-invasive Escherichia coli." Scientific Reports 8 (2018): -. Lopez-Siles, M; Martinez-Medina, M; Surís-Valls, R; Aldeguer, X; Sabat-Mir, M; Duncan, S.H; Flint, H.J; Garcia-Gil, L.J "Changes in the Abundance of Faecalibacterium prausnitzii Phylogroups I and II in the Intestinal Mucosa of Inflammatory Bowel Disease and Patients with Colorectal Cancer." Inflammatory Bowel Diseases 22 (2016): 28-41. Busquets, D.; Mas-de-Xaxars, T.; López-Siles, M.; Martínez-Medina, M.; Bahí, A.; Sàbat, M.; Louvriex, R.; Miquel-Cusachs, J.O.; Garcia-Gil, J.L.; Aldeguer, X. "Anti-tumour Necrosis Factor Treatment with Adalimumab Induces Changes in the Microbiota of Crohn's Disease." Journal of Crohn's and Colitis 9 (2015): 899-906. Lopez-Siles, M.; Martinez-Medina, M.; Abellà, C.; Busquets, D.; Sabat-Mir, M.; Duncan, S.H.; Aldeguer, X.; Flint, H.J.; Garcia-Gil, L.J. "Mucosa-associated Faecalibacterium prausnitzii phylotype richness is reduced in patients with inflammatory bowel disease." Applied and Environmental Microbiology 81 (2015): 7582-7592. López Siles, M.; Martinez-Medina, M.; Busquets, D.; Sabat-Mir,M; Duncan, S.H.; Flint, H.J.; Aldeguer, X.; Garcia-Gil, L.J. "Mucosa-associated Faecalibacterium prausnitzii and Escherichia coli co-abundance can distinguish Irritable Bowel Syndrome and Inflammatory Bowel Disease phenotypes." International Journal of Medical Microbiology 304 (2014): 464-475. Soler, M.; Ruiz-Rueda, O.; Lopez-Siles, M.; Calvó, L.; Kaclíková, E.; Garcia-Gil, L.J. "A New Validated Real-Time PCR-Based Method for the Specific and Fast Detection of Cronobacter spp. in Infant Formula." Food Analytical Methods 5 (2012): 179-187. Soler, M.; Ruiz-Rueda, O.; Lopez-Siles, M.; Calvó, L.; Kaclíková, E.; Garcia-Gil, L.J. "A validated simple and rapid method for the simultaneous detection of both Cronobacter spp. and Salmonella spp. for infant formula quality control.." Dairy Science and Technology 92 (2012): 151-166. Lopez-Siles M., Khan T. M.,Duncan S. H., Harmsen H. J. M. , García-Gil L. J. and Flint H.J. "Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids and host-derived substrates for growth.." Applied and Environmental Microbiology 78 (2012): 420-428. Martinez-Medina, M.; Aldeguer, X.; López Siles, M.; Gonzalez-Huix, F.; López-Oliu, C.; Dahbi, G.; Blanco, J.E.; Blanco, J.; Garcia-Gil, L.J.; Darfeuille-Michaud, A. "Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn's disease." Inflammatory Bowel Diseases 15 (2009): 872-882.
Lopez-Siles, M; Corral-Lugo, A; McConnell, M "Vaccines for multidrug resistant Gram negative bacteria: lessons from the past for guiding future success.." Fems Microbiology Reviews 45 (2021): fuaa054-. Lopez-Siles, M; Duncan, S.H; Garcia-Gil, L.J; Martinez-Medina, M "Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics." ISME Journal (2017): 841-852.